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    <title>ProbTF</title>
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            This application enables the analysis of DNA sequences using <strong>mouse-specific</strong> position weight matrices from the
            <a href="http://www.gene-regulation.com/pub/databases.html#transfac" target="_blank">TRANSFAC</a><sup>&#153</sup> database.
            <br>Help on using this server can be found by clicking on the linked features within the page and <a href="http://probtf.googlecode.com" target="_blank">our open source project on Google Code</a>.
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<form method="POST" enctype="multipart/form-data" action="/tools/probtf">
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                Upload <a href="http://code.google.com/p/probtf/wiki/AdditionalInfo" target="_blank" >sequence in FASTA</a> format
                <br><br>
                <input name="fastaFile" type="file">
                <br><br>
                <font color="red" size="-2">Limit: 5K base pairs</font>
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                <br>Select transcription factor matrices<br><br>
                <font color="red" size="-2">Up to 10 may be selected.<br> [Hold down the <b>Ctrl</b> key to<br> select multiple factors]</font>
                <br><br>
                <select name="factorSearch" multiple size="15">
                    <option value="1">Ahr</option>
                    <option value="2">Ap1</option>
                    <option value="3">Ap2a</option>
                    <option value="4">Arnt</option>
                    <option value="5">Atf2</option>
                    <option value="6">Bach1</option>
                    <option value="7">Bach2</option>
                    <option value="8">Cart1</option>
                    <option value="9">Cebpa</option>
                    <option value="10">Cebpb</option>
                    <option value="11">Chx10</option>
                    <option value="12">Creb1</option>
                    <option value="13">Ddit3</option>
                    <option value="14">E2f</option>
                    <option value="15">E2f1</option>
                    <option value="16">E2f2</option>
                    <option value="17">E2f3</option>
                    <option value="18">E2f4</option>
                    <option value="19">E2f5</option>
                    <option value="20">E2f6</option>
                    <option value="21">E2f7</option>
                    <option value="22">Egr1</option>
                    <option value="23">Egr2</option>
                    <option value="24">En1</option>
                    <option value="25">Esr1</option>
                    <option value="26">Ets1</option>
                    <option value="27">Evi1</option>
                    <option value="28">Fos</option>
                    <option value="29">Fosb</option>
                    <option value="30">Fosl1</option>
                    <option value="31">Foxd3</option>
                    <option value="32">Foxj2</option>
                    <option value="33">Foxo1</option>
                    <option value="34">Foxo3a</option>
                    <option value="35">Gata1</option>
                    <option value="36">Gata2</option>
                    <option value="37">Gata3</option>
                    <option value="38">Gata6</option>
                    <option value="39">Hand1</option>
                    <option value="40">Hmx3</option>
                    <option value="41">Hoxa3</option>
                    <option value="42">Hoxa5</option>
                    <option value="43">Hoxa9</option>
                    <option value="44">Hsf1</option>
                    <option value="45">Hsf2</option>
                    <option value="46">Irf1</option>
                    <option value="47">Irf2</option>
                    <option value="48">Jun</option>
                    <option value="49">Junb</option>
                    <option value="50">Jund1</option>
                    <option value="51">Lhx3</option>
                    <option value="52">Lmo2</option>
                    <option value="53">MGI:1930801</option>
                    <option value="54">Max</option>
                    <option value="55">Mef2a</option>
                    <option value="56">Meis1</option>
                    <option value="57">Mllt7</option>
                    <option value="58">Msx1</option>
                    <option value="59">Myb</option>
                    <option value="60">Myc</option>
                    <option value="61">Mycn</option>
                    <option value="62">Myod1</option>
                    <option value="63">Nfat</option>
                    <option value="64">Nfatc1</option>
                    <option value="65">Nfatc2</option>
                    <option value="66">Nfatc3</option>
                    <option value="67">Nfe2</option>
                    <option value="68">Nfkb1</option>
                    <option value="69">Nfya</option>
                    <option value="70">Nfyb</option>
                    <option value="71">Nfyc</option>
                    <option value="72">Nkx2-2</option>
                    <option value="73">Nkx2-5</option>
                    <option value="74">Nkx3-1</option>
                    <option value="75">Nkx6-1</option>
                    <option value="76">Nr2f1</option>
                    <option value="77">Nr3c1</option>
                    <option value="78">Nr6a1</option>
                    <option value="79">Pax2</option>
                    <option value="80">Pax3</option>
                    <option value="81">Pax4</option>
                    <option value="82">Pax5</option>
                    <option value="83">Pax6</option>
                    <option value="84">Pou2f1</option>
                    <option value="85">Pou2f2</option>
                    <option value="86">Pou3f1</option>
                    <option value="87">Pou3f2</option>
                    <option value="88">Pou6f1</option>
                    <option value="89">Ppara</option>
                    <option value="90">Pparg</option>
                    <option value="91">Prrx2</option>
                    <option value="92">Rel</option>
                    <option value="93">Rela</option>
                    <option value="94">Rfx1</option>
                    <option value="95">Sox5</option>
                    <option value="96">Sp1</option>
                    <option value="97">Srf</option>
                    <option value="98">Sry</option>
                    <option value="99">Stat1</option>
                    <option value="100">Stat3</option>
                    <option value="101">Stat4</option>
                    <option value="102">Stat5a</option>
                    <option value="103">Stat5b</option>
                    <option value="104">Stat6</option>
                    <option value="105">T</option>
                    <option value="106">Tbp</option>
                    <option value="107">Tcf1</option>
                    <option value="108">Tcfap2a</option>
                    <option value="109">Tcfap2b</option>
                    <option value="110">Tcfap2c</option>
                    <option value="111">Tcfcp2</option>
                    <option value="112">Tgif</option>
                    <option value="113">Tlx2</option>
                    <option value="114">Trp53</option>
                    <option value="115">Usf1</option>
                    <option value="116">Yy1</option>
                    <option value="117">Zfp278</option>
                    <option value="118">Zfpn1a1</option>
                    <option value="119">Zic1</option>
                    <option value="120">Zic2</option>
                    <option value="121">Zic3</option>

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                    Upload <a href="http://code.google.com/p/probtf/wiki/AdditionalInfo" target="_blank">evidence scores</a> [Optional]
                <br><br>
                <input name="evidencesFile" type="file">
                <br><br>
                <font color="red" size="-2">The number of evidence scores MUST be the same length as the number of basepairs in the uploaded sequence file</font>
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                Select the <a href="http://code.google.com/p/probtf/wiki/AdditionalInfo" target="_blank">order of background model</a> to use
                <br>
                <input name="backgroundOrder" value="0" type="radio" checked> 0
                <input name="backgroundOrder" value="1" type="radio"> 1
                <input name="backgroundOrder" value="2" type="radio"> 2
                <input name="backgroundOrder" value="3" type="radio"> 3
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                <font size="-1">Press <input value=" - OK - " type="submit"> to submit information, or <input value="Reset" type="reset"> to reset fields.</font>
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            <td align=center><p class="copyright">
                The development of the ProbTF is supported by grants from:
                <br>National Institute of General Medical Sciences (R01-GM072855)
                <br>National Institute of Allergy and Infectious Diseases (U54 AI54253)
                <br><span class="copyright">Server Version: 1.0 June 2007</span>
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